Cell Signaling · Unit 3: G-protein-coupled receptors and second messengers
GPCRs and Trimeric G Proteins
How can one receptor fold report adrenaline, acetylcholine, cannabinoids and light, and how can one hormone give opposite answers in two tissues? This lesson shows what an agonist changes in a seven-pass receptor, how the receptor loads a trimeric G protein with GTP, and what the four Gα families and the βγ pair do next. Afterwards you can predict a tissue's first response from its receptor subtype, and tell an agonist, an antagonist and an inverse agonist apart.
Watch first The Receptor Decides the Answer · 2:55
Adrenaline makes your heart beat harder, relaxes the muscle around your airways and narrows the blood vessels in your skin. How does one molecule give each tissue a different order? The hormone carries no instruction about the answer. Each cell decides, through the receptor subtype it puts on its surface and the G protein that receptor hands the signal to. This lesson covers that receptor family, the G-protein-coupled receptors (GPCRs), and the three-part G proteins they switch on.
The idea: one fold, lots of inputs
A GPCR is a single protein chain that crosses the plasma membrane seven times. Each crossing is an alpha helix of twenty or more water-avoiding amino acids. The amino end of the chain lies outside the cell and the carboxyl end inside. The seven helices pack into a bundle with a pocket open to the outside and loops facing the cytosol. You met this architecture in the receptor field guide.
“Lots of inputs/ligands.” Receptors built on this one plan detect adrenaline, acetylcholine, dopamine, histamine, peptide hormones such as glucagon, odorants, bitter and sweet tastes, and light. The human genome holds roughly 800 GPCR genes (Lefkowitz’s Nobel lecture says almost a thousand), about half of them for odorant receptors, and a mouse has about a thousand odorant receptor genes alone. Roughly a third of approved drugs act on a GPCR.
The prototype is a protein that catches light. Rhodopsin, the pigment of the rod cells in the retina, was too greasy to sequence whole. Two laboratories, Paul Hargrave’s in the United States and Yuri Ovchinnikov’s in Moscow, cut it into pieces with a chemical that breaks the chain only at methionine and sequenced the pieces one amino acid at a time. By 1983 both had published the complete sequence of cow rhodopsin. It held seven runs of water-avoiding residues, each long enough to span a membrane.
Three years later the same plan turned up in an unexpected place. In 1986 the laboratory of Robert Lefkowitz at Duke, working with a group at Merck, cloned the gene for a β-adrenergic receptor, a protein adrenaline acts on. Brian Kobilka, a cardiology fellow in the laboratory, had worked toward the gene for almost two years. When the new sequence was compared with known proteins, it resembled rhodopsin, seven spans included. The only other seven-pass protein then known also worked with light, and Lefkowitz recalled in his Nobel lecture that it had been speculated that seven spans were a signature of light-sensitive molecules. Adrenaline has nothing to do with light. The seven spans had to mark something else: the family of receptors that pass their signal to a G protein.
What the agonist changes, and what the receptor does next
An agonist is a ligand that activates its receptor, as in the lesson on binding and dose-response. Adrenaline binds in the pocket among the helices, toward the outer face of the membrane. The contacts it makes shift the helices a little on the outside and a lot on the inside. Compare the crystal structure of the inactive β2-adrenergic receptor with the one caught holding its G protein: the cytoplasmic end of helix 6 has swung outward by about 14 Å. That opens a cavity on the inner face of the receptor, and the tail of the G protein’s alpha subunit fits into it.
The G protein waiting there has three subunits. Gα holds a guanine nucleotide. Gβ and Gγ bind each other so tightly that they act as one unit, written βγ. Lipid tails on Gα and Gγ keep the trio on the inner face of the membrane, as in the lesson on lipid anchors. While Gα holds GDP the three stay together and are silent.
The active receptor is the exchange factor (the GEF) from the lesson on GTPase switches. It grips the G protein and loosens Gα’s hold on GDP. GDP leaves, and GTP, which is more plentiful in the cytosol, takes the empty site. In the textbook picture Gα-GTP then lets go of both the receptor and βγ, though measurements in living cells suggest that Gi may rearrange with βγ rather than fully separate.
active receptor + Gα(GDP)·βγ + GTP → active receptor + Gα(GTP) + βγ + GDP
The receptor appears on both sides because it is a catalyst. Still holding its agonist, it can load another G protein, which is one source of the gain you saw in the lesson on signaling circuits. The cell now has two messengers, Gα-GTP and free βγ, and each can find a target. The signal ends when Gα hydrolyses its GTP and takes βγ back.
”All the pathways”: four Gα families and βγ
Hundreds of receptors feed a small number of G proteins. The human genome has 16 genes for Gα, and by sequence they fall into four families. Learn the main target of each and you can predict the first step after almost any GPCR.
| Gα family | Main direct target | First consequence | Receptors that use it |
|---|---|---|---|
| Gs | adenylyl cyclase, switched on | cAMP rises | β-adrenergic, glucagon |
| Gi/o | adenylyl cyclase, held back | cAMP falls; freed βγ acts | M2 muscarinic, α2-adrenergic, CB1 cannabinoid |
| Gq/11 | phospholipase C-β | PIP2 is cut into IP3 and DAG; calcium rises | α1-adrenergic, M3 muscarinic |
| G12/13 | exchange factors for Rho | actin is rearranged; cells change shape and move | thrombin, lysophosphatidic acid |
βγ is a signal in its own right. Its best-known job is in the heart, where βγ released from Gi binds a potassium channel called GIRK (G-protein-gated inwardly rectifying K+ channel) and opens it.
“Lots of downstream effectors.” Picture an hourglass: many receptors narrow to four Gα families plus βγ, and these fan out again to enzymes and ion channels.
How do you find out which family a receptor uses? One classic tool is pertussis toxin, made by the bacterium that causes whooping cough. It is an enzyme that attaches ADP-ribose to a cysteine near the tail of Gαi and Gαo, the part that fits into the receptor. A G protein modified this way cannot be activated by its receptor, so it stays in the GDP form and its pathway goes quiet. Cholera toxin, from the lesson on GTPase switches, does the reverse to Gs and jams it on. If pertussis toxin abolishes a response, that response runs through Gi/o.
The test helped give a name to an orphan, a receptor gene with no known ligand. In 1990 Lisa Matsuda and colleagues, in Tom Bonner’s group at the National Institute of Mental Health, had a rat brain gene that predicted a seven-pass protein. Allyn Howlett’s laboratory had already shown in nerve-cell preparations that cannabinoids lower cAMP production in a dose-dependent way, that only one mirror-image form of the drug works, and that pertussis toxin blocks the effect. Matsuda expressed the orphan in cultured cells that lacked it, added cannabinoids, and reported the same properties. The orphan was the cannabinoid receptor now called CB1, and it couples to Gi/o.
Same ligand, opposite answers
The receptor subtype and the G protein it couples to decide the answer, not the hormone.
Take acetylcholine. Pacemaker cells of the heart carry the M2 muscarinic receptor, which couples to Gi. The freed βγ opens GIRK channels, potassium flows out, the membrane potential moves away from the firing threshold, and the heart slows. Smooth muscle around the airways carries the M3 muscarinic receptor, which couples to Gq. Phospholipase C-β cuts PIP2, IP3 releases stored calcium, and the muscle contracts. One transmitter quiets one tissue and excites another. At skeletal muscle acetylcholine meets a different kind of receptor again, an ion channel from the receptor field guide.
Adrenaline does the same with a larger cast. Humans have nine adrenergic receptor genes: three α1 subtypes that couple to Gq, three α2 subtypes that couple to Gi, and three β subtypes that couple to Gs.
Design problem
One hormone must make the heart beat harder, relax the muscle of the airways, and narrow blood vessels in the skin. Assign a receptor subtype and a Gα family to each tissue so that this works. Then predict what a drug that blocks only one of your subtypes would do.
One way to do it
Start with the two smooth muscles, because they must do opposite things. Smooth muscle contracts when cytosolic calcium rises, so the skin vessels get a Gq-coupled receptor: α1. Airway muscle gets a receptor that raises cAMP, which in smooth muscle favours relaxation: β2 on Gs. The heart gets β1, also on Gs. Here the same G protein and the same messenger make muscle contract harder, because heart cells and airway cells have different proteins waiting downstream of cAMP (the next lesson follows that messenger). The receptor and its G protein choose the messenger. The cell’s own proteins decide what the messenger means.
Now block one subtype. A drug that blocks only β1 lowers the rate and force of the heartbeat when adrenaline is present and leaves airways and skin vessels alone. That is the reasoning behind β1-selective beta-blockers. A blocker that also hits β2 removes adrenaline’s relaxing effect on the airways, which is a risk for a person with asthma. This assignment is the one the body mainly uses.
Drugs at GPCRs, and why “GPCRs can be unfaithful to trimeric G proteins”
A GPCR is flexible. Even with an empty pocket it flickers between inactive and active shapes, and for many receptors a small fraction is active at any moment. Such a receptor signals a little with no ligand at all. That basal activity gives a drug three ways to act where the lesson on binding gave you two.
- An agonist binds the active shape more tightly, so it holds receptors there and signaling rises above the basal level.
- A neutral antagonist binds both shapes equally well. Alone it changes nothing, but it occupies the pocket and keeps other ligands out.
- An inverse agonist binds the inactive shape more tightly, so it pulls receptors out of the active state and signaling falls below basal.
In a cell with no basal activity an antagonist and an inverse agonist look the same. You need a system with measurable basal activity to tell them apart, and many drugs long called antagonists proved to be inverse agonists when tested that way. Carazolol, the beta-blocker bound in the 2007 crystal structures of the β2 receptor, is a partial inverse agonist.
The table above gives each receptor one partner, and real receptors are less loyal. One receptor can couple to more than one Gα family. The thrombin receptor on platelets activates both Gq and G12/13, so a single signal both raises calcium and reshapes the cell. Which partner dominates can differ between cell types, so a coupling measured in one cell line is a hypothesis about the next. A receptor that has been active for a while also takes a partner of another kind. Kinases phosphorylate its tail and a protein called arrestin binds, which blocks the G protein and assembles a second set of signaling proteins on the receptor. The lesson on turning signals off takes that up.
How we measure it
Cyanogen bromide cleavage and Edman sequencing
Cyanogen bromide cuts a protein chain at methionine, and Edman chemistry then removes and identifies one amino acid at a time from the end of each fragment. Overlapping fragments are pieced into the full sequence. This is how rhodopsin was read before its gene was cloned.
Hydropathy analysis
Score each amino acid in a sequence for how well it tolerates water, then average the scores along the chain. A run of about twenty water-avoiding residues is long enough to cross a membrane as a helix. Seven such runs in rhodopsin and in the β-adrenergic receptor gave the seven-pass model years before a crystal structure of either existed.
Expression of a cloned receptor in cells that lack it
Put the gene for a candidate receptor into a cultured cell line that does not make it, add test ligands, and measure a second messenger such as cAMP. A response that appears only in cells carrying the gene, rises with dose, and is lost after pertussis toxin identifies both the ligand and the G protein family.
Crystallography of stabilised receptors
GPCRs are scarce and unstable in detergent, so crystals were obtained by holding the receptor in one shape: an inverse agonist in the pocket with T4 lysozyme fused in for the inactive state, an agonist with the G protein and a llama antibody fragment for the active one. Comparing the two structures shows what an agonist changes.
Finish line
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cAMP and Protein Kinase A
How can one cell with one messenger give two different responses?
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